rs26881960 SNP Detail

Summary

• ID
  rs26881960
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:8603516 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTGAGTC AGGTAATTCC
  TGGTCCAAGG ACACAAAGCT ATCTTGTCCT TGGAGTTGAC TGAAAAGCGA AAGATCAAAC
  ATGTTACCAC CGCATGGCTA CTTCAGTCTC AGGACATAAA CATGAAGACC TGTGACCCAC
  AGCATGCCCC CTTAGAACAC CCTGGAGGGG AAAAGGGCTA AGAAAGCTCA AGAGGCCTTG
  Y
  AGCCAATCCG ACCTGACCAG TAGGGGGAGG AGAAGGGGGC TGGCATGAGG TCACTGTCCC
  TATTATAAAA GGCTTCTTTG GCCCCAACAA GAAATCATAT CAAGGAAGAA AGACCGCAAG
  TGTGCCCTTC ACTTTTATAT AGGAAGGTCC CTAGGTGCAC AACCCCACCG CTAACCACTC
  AGCAAGGTCA ATACTAACAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37102682	NES08402397	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs26881960					SNP	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37102682	NES08402397	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:8603516 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr442578	regulatory region 442578			within coordinates
Rr442579	regulatory region 442579			13 bp proximal
Tns3	tensin 3			Intron
				Noncoding-Transcript-Variant
Tssr106844	transcription start site region 106844			328 bp upstream