rs26881955 SNP Detail

Summary

• ID
  rs26881955
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:8604021 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCACCCCT AGAACAAATA
  GGCAGGGCCA CTTTGTCCCC AGCAGCTCCA GGCTGAGGCT CTCCCCTTAT TTGAACAAAA
  CCATCTGGCA CCACAGGAGC CAGGGAACTG AAGTTCCCAA GACACGTGGT TCTGACGACG
  GGCAGAACGT GGCGGAAACA ACGAAAGGCC AGACGGTAAT TCCAGAGGTT AAAGGGACAC
  R
  GGACAATAGA GATCATAGTC AGACAAAAGT CTCTGTCAGC TCAGCCACAC TCACCCTCCC
  AGCTCATCCT GGCACCAAGA ACTGACCCAG TCTGCCTGGA GCAGGGCTGG GTTGGCAGTG
  TGGTGCATGG CTGAATTCAG AGGCCTCAGC TGGACACTTA CCAACAGTCC CAGCCAGAAA
  CACCCGCAGG GCCAAAGTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37102677	NES08402402	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A			G	G	A	G
ss131662727	ENSMUSSNP4773943	ENSEMBL	ENSEMBL_Sanger	f	SNP	G						G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26881955					SNP	G	G	G	G	G	A	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37102677	NES08402402	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:8604021 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr442578	regulatory region 442578			within coordinates
Rr442579	regulatory region 442579			471 bp distal
Tns3	tensin 3			Intron
				Noncoding-Transcript-Variant
Tssr100310	transcription start site region 100310			1598 bp upstream
Tssr106844	transcription start site region 106844			833 bp upstream