rs26828458 SNP Detail

Summary

• ID
  rs26828458
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:78692164 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGATTCCGT GGTTGGTGGG
  GTAAGGCTGT TCTTAGTTGG CAGAGCAAGT TGTCTGGTTA ATTAAGATAA CGAAAGAGAC
  TCTGGCATAA TAACTAGTTA TGCAACCCCC GAGCAGTCGG CGTCCCCCAA CTTCTTAGAG
  GGACAAGTGG CGTTGAGCAA TAACAGGTCT GTGATGCCCT TAGATGTCCA GGGCTGCACG
  Y
  GAGATACACT GACTGGCTCA GCATGTGCCT ACACTATGCC CGGCAGGCGC GGGTAACCCA
  TTGAACCCCA TTCGTGATGG GGATCGGGGA TTGCAATTAT TCCCCACCAA CGAGGAATTC
  TCAGTAAGTG CAGGTCATAA GCTTGCATTG ATTAAGTCCC TGCCCTTTGT ACACACTGCC
  CGTCACTACT ACCAATTGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37044679	NES09483753	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26828458					SNP	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37044679	NES09483753	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:78692164 () rs orientation: forward

Symbol	Name	Function Class
Rr594151	regulatory region 594151	within coordinates
Tssr37651	transcription start site region 37651	203 bp downstream
Tssr37652	transcription start site region 37652	81 bp downstream
Tssr37653	transcription start site region 37653	114 bp upstream