rs26828457 SNP Detail

Summary

• ID
  rs26828457
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:78692206 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCAAGTTG TCTGGTTAAT
  TAAGATAACG AAAGAGACTC TGGCATAATA ACTAGTTATG CAACCCCCGA GCAGTCGGCG
  TCCCCCAACT TCTTAGAGGG ACAAGTGGCG TTGAGCAATA ACAGGTCTGT GATGCCCTTA
  GATGTCCAGG GCTGCACGCG AGATACACTG ACTGGCTCAG CATGTGCCTA CACTATGCCC
  R
  GCAGGCGCGG GTAACCCATT GAACCCCATT CGTGATGGGG ATCGGGGATT GCAATTATTC
  CCCACCAACG AGGAATTCTC AGTAAGTGCA GGTCATAAGC TTGCATTGAT TAAGTCCCTG
  CCCTTTGTAC ACACTGCCCG TCACTACTAC CAATTGGATG GTTTAGTGAG GCCCACTGGG
  GTCAGGCCGT GGTGGAGCGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37044678	NES09483754	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26828457					SNP	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37044678	NES09483754	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:78692206 () rs orientation: forward

Symbol	Name	Function Class
Rr594151	regulatory region 594151	within coordinates
Tssr37651	transcription start site region 37651	245 bp downstream
Tssr37652	transcription start site region 37652	123 bp downstream
Tssr37653	transcription start site region 37653	72 bp upstream