rs26828456 SNP Detail

Summary

• ID
  rs26828456
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:78692300 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGGGACAA GTGGCGTTGA
  GCAATAACAG GTCTGTGATG CCCTTAGATG TCCAGGGCTG CACGCGAGAT ACACTGACTG
  GCTCAGCATG TGCCTACACT ATGCCCGGCA GGCGCGGGTA ACCCATTGAA CCCCATTCGT
  GATGGGGATC GGGGATTGCA ATTATTCCCC ACCAACGAGG AATTCTCAGT AAGTGCAGGT
  Y
  ATAAGCTTGC ATTGATTAAG TCCCTGCCCT TTGTACACAC TGCCCGTCAC TACTACCAAT
  TGGATGGTTT AGTGAGGCCC ACTGGGGTCA GGCCGTGGTG GAGCGCTGAG AAGATGGTAG
  AACTTGACTA TCTAGAGGAA GTAAAAGTCG TAATGAGGTA GTCTTATTCC TGAGCCTGTT
  TTCCTAGATT CTGGAAGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37044677	NES09483755	PERLEGEN	MM_PANEL2	f	SNP			C	C	C	T	C	C	C		C	C	T	C
ss146655442	ENSMUSSNP5054482	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C								T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26828456					SNP	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37044677	NES09483755	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:78692300 () rs orientation: forward

Symbol	Name	Function Class
Rr594151	regulatory region 594151	within coordinates
Tssr37651	transcription start site region 37651	339 bp downstream
Tssr37652	transcription start site region 37652	217 bp downstream
Tssr37653	transcription start site region 37653	9 bp downstream