rs26828455 SNP Detail

Summary

• ID
  rs26828455
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:78692311 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCGTTGAG CAATAACAGG
  TCTGTGATGC CCTTAGATGT CCAGGGCTGC ACGCGAGATA CACTGACTGG CTCAGCATGT
  GCCTACACTA TGCCCGGCAG GCGCGGGTAA CCCATTGAAC CCCATTCGTG ATGGGGATCG
  GGGATTGCAA TTATTCCCCA CCAACGAGGA ATTCTCAGTA AGTGCAGGTC ATAAGCTTGC
  R
  TTGATTAAGT CCCTGCCCTT TGTACACACT GCCCGTCACT ACTACCAATT GGATGGTTTA
  GTGAGGCCCA CTGGGGTCAG GCCGTGGTGG AGCGCTGAGA AGATGGTAGA ACTTGACTAT
  CTAGAGGAAG TAAAAGTCGT AATGAGGTAG TCTTATTCCT GAGCCTGTTT TCCTAGATTC
  TGGAAGAAAG AGGATGAGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37044676	NES09483756	PERLEGEN	MM_PANEL2	f	SNP			A	A	A	G	A	A	A	G		A	A	A
ss146655451	ENSMUSSNP3126461	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A									G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs26828455					SNP	A	A	A	A	A	G	A	A	A	G	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37044676	NES09483756	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:78692311 () rs orientation: forward

Symbol	Name	Function Class
Rr594151	regulatory region 594151	within coordinates
Tssr37651	transcription start site region 37651	350 bp downstream
Tssr37652	transcription start site region 37652	228 bp downstream
Tssr37653	transcription start site region 37653	20 bp downstream