rs26828454 SNP Detail

Summary

• ID
  rs26828454
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:78692743 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAAGTGAGAG ATCATTATGA GGGCAATATG AGAAGTAGCC
  AAAGGCAGTA TAATGTGGCT GGAAGAAAGA AAGGCTTTTC ATGAATACAT GGAAAAGAAC
  W
  TTAGTAGGAT AGACATCTGG CATGAAATGC ATAAGAAGTT TCTGAAAATA AAGTGTCTTA
  CTTAGGATTC CTATTGTTGT AATACAATGT TGTGACAAAA                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37044675	NES09483752	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26828454					SNP	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37044675	NES09483752	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:78692743 () rs orientation: forward

Symbol	Name	Function Class
Rr594151	regulatory region 594151	240 bp distal
Tssr37651	transcription start site region 37651	782 bp downstream
Tssr37652	transcription start site region 37652	660 bp downstream
Tssr37653	transcription start site region 37653	452 bp downstream