rs266240572 SNP Detail

Summary

• ID
  rs266240572
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152260751 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGTTGCACA CTATGTTATT
  TTGTACTACA TAATTACATG TAACAAAATC CTAATATAGT AACATTTCTA AAAAAATTTT
  TTTGGTGATG CACCATGTGT GTGCAGGTGA CCCAGTCCAC GGGTCAATCA ACGGGGCCTG
  CAAGAGAGAG AGTGGGGACG TAGGGGCAAG AGACGTGAAG AATGGAGACA AGACAGTCTC
  R
  AGTCTCGTTT ATTGGAAGGC AACTATGGGT ATATATGCAC TCGCTGGGGA GTGCAGCTGG
  AGACACTTAA CCACAAGTCC AGGATATACA GGAGAAAAAT AAGATGTTAT CAGAGTGTGT
  TCAGCTGAGG TGGGCTTCTT GCAAAAACAT CATGCTAGGA AAACAAGTCT CTCGTCAGCG
  TGGAAAAGCA CCCACCTGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363707085	MGP_WTSI_4_151550403	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs266240572					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363707085	MGP_WTSI_4_151550403	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152260751 () rs orientation: forward

Symbol	Name	Function Class
Acot7	acyl-CoA thioesterase 7	Intron
Gm68502	predicted gene, 68502	586 bp upstream
Rr398897	regulatory region 398897	1749 bp upstream
Rr605778	regulatory region 605778	1914 bp distal
Rr605779	regulatory region 605779	1350 bp proximal
Tssr40515	transcription start site region 40515	1518 bp upstream
Tssr40516	transcription start site region 40516	1651 bp upstream
Tssr40517	transcription start site region 40517	1663 bp upstream
Tssr40518	transcription start site region 40518	1722 bp upstream
Tssr40519	transcription start site region 40519	1741 bp upstream
Tssr40520	transcription start site region 40520	1811 bp upstream
Tssr40521	transcription start site region 40521	1832 bp upstream
Tssr40522	transcription start site region 40522	1879 bp upstream
Tssr40523	transcription start site region 40523	1916 bp upstream
Tssr40524	transcription start site region 40524	1943 bp upstream
Tssr44824	transcription start site region 44824	1742 bp downstream