rs266239938 SNP Detail

Summary

• ID
  rs266239938
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:120017341 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTGTTAG ATTTAATAAA
  GAAGGCAGGT TGTGAACAGT TTGAAATACA AGTGCAGAAG GGGCAGGAAG AATACTGAAA
  TATTAGTGCT CTACTGTTTT AGAAAATCAT TAGTTCACTT TATTAATGGT AAGTCTGTTT
  TAGTACATTT AATTAGTGGT TTATCTCCAG TGATAAATCT AATGTCAGCA AATGAAGAAG
  Y
  AACTATGAAG TGCATTTTTC TTGTACTTCT TAAGACTGTT GATTATAATT TTCTCAAAGT
  TGCTTTACCA GAGAAAACTT TGTTTATAAC ACAAAGAAAC TTAATTATAC AGTGGTGGGT
  TTTTAAAAGA CCAGTAAATC ACAGTTTTTT TTTTATTTAT TGTATGTTTG TTTCTATAAA
  AAGAAATTAG GATATTTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369858100	MGP_WTSI_6_119990398	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs266239938					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369858100	MGP_WTSI_6_119990398	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:120017341 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17916	CpG island 17916	1399 bp distal
Cpgi17917	CpG island 17917	347 bp distal
Gm66353	predicted gene, 66353	within coordinates
Rr399863	regulatory region 399863	1400 bp downstream
Rr399864	regulatory region 399864	475 bp downstream
Rr637760	regulatory region 637760	1548 bp distal
Rr637761	regulatory region 637761	151 bp distal
Rr637762	regulatory region 637762	574 bp distal
Tssr58518	transcription start site region 58518	454 bp downstream
Tssr62757	transcription start site region 62757	1825 bp upstream
Tssr62758	transcription start site region 62758	1744 bp upstream
Tssr62759	transcription start site region 62759	1681 bp upstream
Wnk1	WNK lysine deficient protein kinase 1	1708 bp upstream