rs266227715 SNP Detail

Summary

• ID
  rs266227715
• Variation Type
  SNP
• Alleles
  C/G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:47440411 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTGCTTTC ACCTATATTT
  TTGATCTTAG CCATTCTGAC TGATATGAGG TGGAATCTCA GGGTTGTTTT GATTTGCATT
  TCCCTGATGA TTAAGGATGT TGAACATTTT TTAGGTACTT CTCAGATATT TGGTGTTCCT
  CAGTTAAGCA TTCTTTGTTT ATCTCTATAC CCTGTTTTTA ATAGGGTTAT TTGGTTTTCT
  B
  GAGTCCAAAT ACTTGAGTTC TTTATATATA TATTAGATAT TAGCTCTCTA TTGGATTGGT
  AAAGATATTA TCCCAATCTA CTGGTTACCA TTTTGCCTTA TTAACAGTGT CCTTTGCAAT
  TTTATGAGGT CCCATTTGTT GATTTTTGTT CTTAAAGCAC AAGCCATTTC TGTTCTGATC
  AGGAACTTTT CCCTGTGCCC                                            
  
  B = C/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	JF1/MsJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss357828750	MGP_WTSI_3_47289898	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	C	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	C	C	C	G	G	C	G	G	G	C	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	JF1/MsJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs266227715					SNP	G	G	C	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	C	C	C	G	G	C	G	G	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357828750	MGP_WTSI_3_47289898	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:47440411 () rs orientation: forward

Symbol	Name	Function Class
Rr576073	regulatory region 576073	1946 bp distal