rs266227324 SNP Detail

Summary

• ID
  rs266227324
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:106943499 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCGGCGATC CAGTGACAAA
  GAAGGTCGAG GAACAAGGGT GGCAAGCGGG AAGCGGAGCG CGCGCGCGCG GTGGGCGGGA
  AACCCGGGGG CGGTGGCAGA GAGGCGGGCG CGCGCCCCGC GGGGAGGGGT GCGGAGGAGG
  GAGGAGGAGG CGTCTGGACC GTGCAGCCCC GCGGGCCGCG CCAGCCCAGA CAGAGCCTCG
  S
  GGCAGCCGCA GCAACAGGCG GCGGGGCCGG GCTCGTAGGG CAGAGGCGGC GGTGGGGCGG
  GGAGCTCCAG GAGGAGCGAC TCGGGCCGGC AGCCGCCAGC AGGGAAGGAA AGCACCGCCG
  CCTCCCGCGC TCGACCGCCG CAGCCCTCCA CCCATCACCG CGCCCACCCT GCACCGGACC
  CCGCAGGAGG CGGCGCGCGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss359136868	MGP_WTSI_3_106839101	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs266227324					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359136868	MGP_WTSI_3_106839101	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:106943499 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13669	CpG island 13669	within coordinates
Gm56792	predicted gene, 56792	1364 bp downstream
Kcna3	potassium voltage-gated channel, shaker-related subfamily, member 3	mRNA-UTR
Rr582885	regulatory region 582885	4 bp distal
Rr582886	regulatory region 582886	487 bp proximal
Rr582887	regulatory region 582887	1393 bp proximal
Tssr31148	transcription start site region 31148	2 bp downstream
Tssr35008	transcription start site region 35008	1860 bp downstream