rs266191539 SNP Detail

Summary

• ID
  rs266191539
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141172312 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTGAGGCC CGGGCGGCGC
  CAGCGGTCCG GAAGTCCCGG GAGGCGGGAC CCGAGGCGGC CGGGGACCGG GGCCACGGGA
  CGCCGGGACG GTTGTGTGGG GGAGGGGAGG CCCGGGCGGA GGGCGCCGCG GGGCCCCGGG
  GCGGCGGGAG CGGCCCGGAG GGGTGGCCAT GCACCCGCGC GGCCGACGGG GCGCGAGTCG
  Y
  CTCCCGGGCT GGGTGACACC GCGGCTGGTG GCATCTCCGC CCCCGCCGCC GGGCTGTCAC
  CGCCCCCTGA CCCCGCGCGC CGGCTGCGGC GGGTGGGCGT GCTGCGGCCG CGTGGGGGCG
  AAGTGCGGGG CGGCGCGGGG CTGGTGGGGG CGACCTGGAT GTGTCCCGGA CCGGGAGCCG
  CACTGACCTC CCGTCACAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363521077	MGP_WTSI_4_141000916	EVA_MGPV3	EVA_MGPV3	f	SNP	T	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs266191539					SNP	T	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363521077	MGP_WTSI_4_141000916	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141172312 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15230	CpG island 15230			within coordinates
Gm42337	predicted gene, 42337			Coding-NonSynonymous
Rr603768	regulatory region 603768			337 bp distal
Rr603769	regulatory region 603769			within coordinates
Rr603770	regulatory region 603770			104 bp proximal
Tssr40079	transcription start site region 40079			287 bp downstream
Tssr44320	transcription start site region 44320			428 bp downstream
Zbtb17	zinc finger and BTB domain containing 17			Intron
				Noncoding-Transcript-Variant