rs266159087 SNP Detail

Summary

• ID
  rs266159087
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:132292877 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGTACTGG CTATCTCTCC
  CTTGCAGGAA GTCTTGGGGT GATGCCGACA AACCAGAGCT GCTGGCCGAA GACTTGGGGG
  ATACTGAGGG ATAAAGGACT CATAGCTCTC TCATTTGCGG CTTGACAGAG CACTAGAATG
  CGCTCCAGAT GGTCAGTGAG CTGGGGTGGG GGATGGTGAC TGCCAGAGAA GAGGGAATCC
  Y
  TTCCTCTGCA CACCCAGCCA GAGAGAAAAG GAGATGACTG GCCGTCTGTG TCTGCCATTT
  TGCTTATAAT CTGCGGCGAC CTTGGGCCAT TGAGTAGTCT CGATTTTCTT CTTTGTGGTT
  TAAAATTCTG ACCTTGTAGG TTTGTGGAAG GATGAACTAA GAAGGTGGGG GACGTGCTTT
  GCTGAGCATA AAACAGTAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321334513	CHEV_4_132121481	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs266159087					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132292877 () rs orientation: forward

Symbol	Name	Function Class
Ptafr	platelet-activating factor receptor	Intron
Rr601015	regulatory region 601015	1489 bp distal
Rr601016	regulatory region 601016	1269 bp distal
Rr601017	regulatory region 601017	1441 bp distal
Rr601018	regulatory region 601018	1286 bp distal
Rr601019	regulatory region 601019	54 bp distal
Rr601020	regulatory region 601020	1745 bp proximal
Tssr39383	transcription start site region 39383	1973 bp downstream
Tssr39384	transcription start site region 39384	1938 bp downstream
Tssr39385	transcription start site region 39385	1829 bp downstream
Tssr39386	transcription start site region 39386	1490 bp downstream
Tssr39387	transcription start site region 39387	1473 bp downstream
Tssr39388	transcription start site region 39388	1356 bp downstream
Tssr39389	transcription start site region 39389	198 bp downstream
Tssr43688	transcription start site region 43688	1898 bp downstream
Tssr43689	transcription start site region 43689	1925 bp downstream