rs266153035 SNP Detail

Summary

• ID
  rs266153035
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:106453713 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTTCAGAG GAGGAGGGAC
  CAAAAGCCTA GAGCTGTATT CTTTTTTATA TTCTCTTAAA AACAGCACTG CATGGCCCTC
  AAAATGAGCA CCACCAGCAT TTCTAGCCAG TTTAAAGAGC AAAATATAGC TGGGTGGTGG
  TGCACACCTG TGATTCCAGC ACTAAGAAGG TAGAGAGAAG CAGGGGGATC CCTGAGTTGG
  Y
  GCGGATCTGG TCTACACAGC AAGTACCAGA ACAGCCAAGG ATACATAGTG AAACTTTGTC
  TAGAAAAAAA ACCCAACCAA CCATAAAAAA AAGAAGAAAA GAAGAAAAGA AGAAGAAGAA
  GAAGAAGAAG AAGAAGAAGA AGAAGAAGAA GAAGAAGAAA GCAAAATGTA GTTTAGAAAA
  GAAAGTGCTA TGCAATAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359130118	MGP_WTSI_3_106349315	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs266153035					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359130118	MGP_WTSI_3_106349315	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:106453713 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cept1	choline/ethanolaminephosphotransferase 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Cpgi13666	CpG island 13666			760 bp proximal
Dram2	DNA-damage regulated autophagy modulator 2			1401 bp upstream
Rr375539	regulatory region 375539			835 bp upstream
Rr582853	regulatory region 582853			1158 bp distal
Rr582854	regulatory region 582854			426 bp distal
Rr582855	regulatory region 582855			461 bp proximal
Rr582856	regulatory region 582856			1175 bp proximal
Rr582857	regulatory region 582857			1486 bp proximal
Tssr31114	transcription start site region 31114			498 bp downstream
Tssr31115	transcription start site region 31115			1300 bp upstream
Tssr31116	transcription start site region 31116			1330 bp upstream
Tssr31117	transcription start site region 31117			1425 bp upstream
Tssr34980	transcription start site region 34980			225 bp upstream
Tssr34981	transcription start site region 34981			1167 bp downstream
Tssr34982	transcription start site region 34982			1185 bp downstream
Tssr34983	transcription start site region 34983			1305 bp downstream
Tssr34984	transcription start site region 34984			1329 bp downstream