rs266080580 SNP Detail

Summary

• ID
  rs266080580
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137116996 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTCTGTGC ACCACAGGCA
  TGCCTGATAC CCACGGAGGC CAGAAAACAA GCAGTGGATC CCATGGAAGT GGACTTAAAG
  ACATTGTGAG ACACCATGTG GGTACTGAGA ATCTAAGCCA GACCATCTGG AAGGCCAGCT
  CTTAACCTCT GAACCATTTC CCCAGCCAAC TTTCTTATAC AGCCCAGGAC CACCTTCCTG
  R
  TGACAGCACT ACTACAGTGG GCCTGGACCT ACTATATCAG TTAGCAACGA AGAAAACACC
  TCGGCTGGGA GGTGTTGGCC CAGCACTAGG GAGGCAGAGG TAGGCTGATG TACAGACTGA
  GTTTCAGGAC ATCCAGGGCT ACACAGAGAA ACAGGGGTAG GGGTATGAAT GGGAAAAGGG
  ACTAAGACTC TTCCCTCTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321363484	CHEV_4_136945600	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs266080580					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137116996 () rs orientation: forward

Symbol	Name	Function Class
2810405F17Rik	RIKEN cDNA 2810405F17 gene	957 bp upstream
Cpgi15128	CpG island 15128	962 bp distal
Gm52681	predicted gene, 52681	within coordinates
Rr377264	regulatory region 377264	354 bp downstream
Rr602608	regulatory region 602608	1180 bp distal
Rr602609	regulatory region 602609	968 bp distal
Rr602610	regulatory region 602610	467 bp distal
Rr602611	regulatory region 602611	1812 bp proximal
Tssr1346	transcription start site region 1346	981 bp downstream
Tssr44122	transcription start site region 44122	1518 bp upstream
Tssr44123	transcription start site region 44123	1255 bp upstream