rs266074875 SNP Detail

Summary

• ID
  rs266074875
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152574263 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCCAGGCT TGGCAGTAGC
  ATGGCACCGA TTGGGTCCAT GTTCCCCAGG GAGCCTCTTG GCTGCCTTTA GCTCAGGCTA
  GCTCCCAGGT AGGTGCCTGG TGCCGGGGGA GAGAACGTCT CCATCCCATT GACAGTGGGA
  GCAGGACACC GGCTGTGAGC TATGAATGTC CTCAGAAGAG GTAGAAGGTT TGGGAGCCTG
  T
  TTCAGGCAGG GCTGTGGAGC ACAGCCCATG AGAGGCCAGG GCTGACGGGA TGAGAAGGAA
  CCGGGCACCA GGATGAACAG CTAGTGTGTG AGGGGGAGGG GGAGTGGGAG GGGGCTGCTG
  TGGTGGTGGT GGTGAGCTGG GTGGCAGCTG TGTCCTGCAG GCCTTCTCAG TGACGCTGGG
  CTCTTTAAGA GTTGAAGAGG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321434948	CHEV_4_151863915	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs266074875					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152574263 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nphp4	nephronophthisis 4 (juvenile) homolog (human)			Intron
				Noncoding-Transcript-Variant
Rr605890	regulatory region 605890			1516 bp proximal
Rr605891	regulatory region 605891			1625 bp proximal
Tssr40559	transcription start site region 40559			1474 bp downstream