rs266054599 SNP Detail

Summary

• ID
  rs266054599
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113600627 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gaaacaatg ctacccaaaa aaaaaaaaAA
  AAAAAAATCC AACTgccctt ggtccctgtt ctctggagtc tgaggcaggg agatctttga
  gttcaggaca agccggatat acataatgag ttctaggcct acatagtgag accctacctc
  W
  aaGCAAGTCT TTCTggcatg gagataacgg ctttaatccc agtactctgg aagcagaggc
  aggcagatct ccgagagttc gaggccagac tgatctaggg tgtgagttcc aggacagcca
  ggattacacg aagaaactct atcttggggg                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321911154	CHEV_6_113573660	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs266054599					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113600627 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17851	CpG island 17851	5 bp proximal
Rr636555	regulatory region 636555	within coordinates
Tssr58233	transcription start site region 58233	322 bp upstream
Tssr58234	transcription start site region 58234	382 bp upstream
Tssr58235	transcription start site region 58235	460 bp upstream
Tssr58236	transcription start site region 58236	1001 bp upstream
Tssr62461	transcription start site region 62461	134 bp upstream
Vhl	von Hippel-Lindau tumor suppressor	328 bp upstream