rs266053413 SNP Detail

Summary

• ID
  rs266053413
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:145575093 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATACATGAT TTTAAACCAC
  AGAGAGACTG AGAGAGACTG GAGAGACAGC TCAGTGTTTA AGAGCATTTG CTGATTTTGC
  AAAGGACCTG GGTTCGATTC CCAGTATCCA CACAGCTCTG GCTCCAAGGG ATATGGTGCT
  CTATTCTGAC CTTTGTGGAC ACCAGAGATT GCCATGGGGC AATTACGCAA AATAAAGCTA
  W
  AGAAAAATAT TTAGCTGAAT AAAGTTTGAA GGTTGAAAAA AAAAAAGTAT ATCAAGGCCA
  AAAGTTATTC CCCCACAAAG ACTGCTCAAC GTTTCTGTAG TCTGTGCAGG TGAATGTAAG
  GAACTAAGAG TTGCTGGAGT GATGAGAAAC AGGCATTTGA TCACCCTGAC AGAACAGGCA
  GATAACTGGT CCCCAGGGCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	CBA/J	FVB/NJ	I/LnJ	JF1/MsJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363599766	MGP_WTSI_4_145438426	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	A	A	T	T	A	A	A	T	A	A	A	A	T	T	T	T	A	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	CBA/J	FVB/NJ	I/LnJ	JF1/MsJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs266053413					SNP	T	T	A	A	T	T	A	A	A	T	A	A	A	A	T	T	T	T	A	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363599766	MGP_WTSI_4_145438426	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:145575093 () rs orientation: forward

Symbol	Name	Function Class
Rr604403	regulatory region 604403	377 bp distal