rs266016280 SNP Detail

Summary

• ID
  rs266016280
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137336594 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTGCTCGCT GATGGCTCTG TTCCATTTTG
  GGTGGCATTT TGATTCATGG GCACATCCGT TATTAGAGAG TTTGTCAAAT AAGCAATATC
  TGTTTTTGTA AAGGTCCAAA AGGAGCTATA AAGTACCAAG TAGTCTGCAC CTTAACTTAA
  S
  TTTAGAGCAC TGTGTGCTAG TTTGTGTGTA AAGGTGTGTG TGCTTGGTTA TAGGCAGCAC
  ATGCCCCTCC CTCCATGTTT CTGCTTTTTC TATATTCTGA GAGCTCCCAT CAGTGGAGTT
  GCTCTGACGA GTGTGATAGA CGAGCTTGGA                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321365622	CHEV_4_137165198	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs266016280					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137336594 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr602660	regulatory region 602660			268 bp proximal
Tssr39763	transcription start site region 39763			1388 bp upstream
Usp48	ubiquitin specific peptidase 48			Intron
				Noncoding-Transcript-Variant