rs265959193 SNP Detail

Summary

• ID
  rs265959193
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:148716043 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATACAACTC TTTGTCGTCT
  AAAACCTGGG CTTCCTTTGG GTCAACTTTG GGGCTTTAGC AGCTCCTGCA GCTAGCTCCT
  CTGTCAGAGT CTAAGTCTAA GGTAGTCTGT CCATCTACTC AGTGGGTGGA GGGTGATTAG
  AGCTATCTTG GGGGGTAATT AGCAAAACCC CTGAGGGATA TCCCGAGGAT ATTCCAGGGC
  Y
  ACAAGAAGAG GGAAGCAAGG CTTCTTAGAA CAACTAGACA GCACCTTCTG AGAAGACACA
  AGGGGACCTG CCTGGTGACC TGCACCAACA TGACAGCCAA GAAACTCAGA CACCAATCTA
  CACAGTTATG TGTCCCTTAA GGATAGAGGC TCCTTCTGAG AAATGTGCCC TGGCCACACT
  GTGTACAAGC TAATACGGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320557217	CHEV_2_148699859	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs265959193					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:148716043 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cst3	cystatin C			Intron
				Noncoding-Transcript-Variant
Rr374041	regulatory region 374041			9 bp upstream
Rr566976	regulatory region 566976			1409 bp proximal
Rr566977	regulatory region 566977			1443 bp proximal
Tssr20681	transcription start site region 20681			1232 bp downstream
Tssr20682	transcription start site region 20682			1025 bp upstream
Tssr20683	transcription start site region 20683			1101 bp upstream
Tssr26685	transcription start site region 26685			1217 bp upstream
Tssr26686	transcription start site region 26686			1184 bp upstream
Tssr26687	transcription start site region 26687			1053 bp upstream
Tssr26688	transcription start site region 26688			1298 bp downstream
Tssr26689	transcription start site region 26689			1329 bp downstream
Tssr26690	transcription start site region 26690			1481 bp downstream
Tssr26691	transcription start site region 26691			1500 bp downstream