rs265933820 SNP Detail

Summary

• ID
  rs265933820
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:74533701 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCACCCCCA ATAACACGTC
  CCCTATACTC TCTAATGTAA ATTTTAATAA CACAAGTCTT TATCATCTAT AGGGTCATCA
  ATAATTTGTT TACCTTCACC ACTTTTAGCT ATTCCTTGTC GAAATAATTG AGTTATACAT
  TACTAACGAA AATGCCTTTC TATGATGACC TTATTTATAA AAAGGAGATT CAGACCTCTC
  S
  GACTGACCTC GCGATTCTTT CCACAGGGGC TGAACAACCC CCGCAAGGGA TGGAAGGTCG
  TTAAAATTCT GGCCTCCTGA ATCTTTGAGT CCATCTGGGT TTTTAGGCAT TTGTATTTGG
  CCGTGGGAGG TCAGCACGGT GTGATTTAGT GTAAGCTGGA GAGTCTTTGG TGAGCTGGGG
  TGCATCTTCT AGGTCTGTCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354485002	MGP_WTSI_2_74541414	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs265933820					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354485002	MGP_WTSI_2_74541414	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74533701 () rs orientation: forward

Symbol	Name	Function Class
Gm38462	predicted gene, 38462	within coordinates
Gm75671	predicted gene, 75671	within coordinates
Hoxd8	homeobox D8	1272 bp upstream
Igs15	intergenic site 15	within coordinates
Rr44607	regulatory region 44607	701 bp distal
Rr559360	regulatory region 559360	1898 bp distal
Rr559361	regulatory region 559361	310 bp distal
Rr559362	regulatory region 559362	945 bp distal
Rr559363	regulatory region 559363	within coordinates
Rr559364	regulatory region 559364	893 bp proximal
Rr559365	regulatory region 559365	1269 bp proximal
Rr559366	regulatory region 559366	1373 bp proximal
Rr559367	regulatory region 559367	1390 bp proximal
Tssr18420	transcription start site region 18420	1175 bp upstream
Tssr18421	transcription start site region 18421	1266 bp upstream
Tssr18422	transcription start site region 18422	1468 bp upstream
Tssr18423	transcription start site region 18423	1504 bp upstream
Tssr18424	transcription start site region 18424	1560 bp upstream
Tssr18425	transcription start site region 18425	1689 bp upstream
Tssr18426	transcription start site region 18426	1729 bp upstream
Tssr18427	transcription start site region 18427	1788 bp upstream
Tssr18428	transcription start site region 18428	1821 bp upstream
Tssr18429	transcription start site region 18429	1983 bp upstream