rs265923729 SNP Detail

Summary

• ID
  rs265923729
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:97296543 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATAATTTTTA AATCAAGTGG TGAATTGATT TCAATATATT
  CTCTTTTGTA CCTTAAAACT CTCAGCTTTC GGGATGAAAA CCAGCAAGCT TTAAAAAAAA
  W
  AAAAAATAAA AATAAAATTG ACAACTCCCA CACAGCCTGA ATTGCTTTTT CTGATTACAA
  GCCTCGGACG CTGAGGGGCT GCTTTAAAAC GGCGTTTTT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CBA/J	CE/J	DBA/2J	KK/HlJ	LG/J	LP/J	MA/MyJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	RF/J	RIIIS/J	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss354950789	MGP_WTSI_2_97306355	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	A	T	A	T	T	A	T	T	T	A	T	A	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CBA/J	CE/J	DBA/2J	KK/HlJ	LG/J	LP/J	MA/MyJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	RF/J	RIIIS/J	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs265923729					SNP	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	A	T	A	T	T	A	T	T	T	A	T	A	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354950789	MGP_WTSI_2_97306355	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:97296543 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11965	CpG island 11965			369 bp proximal
Gm54117	predicted gene, 54117			within coordinates
Gm75348	predicted gene, 75348			271 bp upstream
Lrrc4c	leucine rich repeat containing 4C			Intron
				mRNA-UTR
Rr561447	regulatory region 561447			within coordinates
Rr561448	regulatory region 561448			969 bp proximal
Rr561449	regulatory region 561449			1470 bp proximal
Rr561450	regulatory region 561450			1986 bp proximal
Tssr19016	transcription start site region 19016			249 bp upstream
Tssr19017	transcription start site region 19017			1278 bp upstream
Tssr19018	transcription start site region 19018			1341 bp upstream
Tssr19019	transcription start site region 19019			1377 bp upstream
Tssr19020	transcription start site region 19020			1488 bp upstream