rs265903242 SNP Detail

Summary

• ID
  rs265903242
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113580940 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGAGAAA GAGAGAGAAA
  GAGAGAGAAA GAGAGAGAAA GAGAGAAAGA GAGAGAAAGA GAGAGAAAGA GAGAGAGAAA
  GAGAGAGAAA GAGAGAGAAA GAGAGAAAGA GAGAGAAAGA GAGAGAAAGA GAGAGAAAGA
  GAGAGAAAGA GAGAGAAAGA GAGAGAAAGA GAGAGAAAGA GAGAGAAAGA GAGAGAAAGA
  G
  AGAGAAGAGA AAGAAAGAAA GAAAAGTATT TTGCTCATTT GGTAAATATG GAGATTCAGA
  GTTGGTGGGA CACCTCGAAC AATAAAGACA CTGAAGCTGA TGATCTGAGT GTTCAGTCCC
  ACAAGATGGA AGGTGAGGAA CCCACTCCTG CAAGTTGTCC TGTAACTTCC GCCCGCGTGT
  TGTGCCACGT AAGCGCTCAC                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J
ss369716085	MGP_WTSI_6_113553973	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J
rs265903242					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369716085	MGP_WTSI_6_113553973	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113580940 () rs orientation: forward

Symbol	Name	Function Class
Brk1	BRICK1, SCAR/WAVE actin-nucleating complex subunit	793 bp upstream
Cpgi17850	CpG island 17850	396 bp proximal
Gm67049	predicted gene, 67049	within coordinates
Rr636549	regulatory region 636549	303 bp proximal
Rr636550	regulatory region 636550	527 bp proximal
Rr636551	regulatory region 636551	746 bp proximal
Rr636552	regulatory region 636552	1295 bp proximal
Tssr58230	transcription start site region 58230	770 bp upstream