rs265898208 SNP Detail

Summary

• ID
  rs265898208
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:67510973 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCTGCGTC CATCTCCCAC
  TCCTGTTCAG ATCTGAAGGC GGTTAGTTTT AGCAACTTCC TTCAAAGGAA CAGCAACCTC
  AAAGTTTACA TTTTTCCCTC TACCCACTGC TGAGGATGGG ACCGAGGGCC GGGTCAGATG
  CGAGGCAAGC ACACTAGCCC AGTCTCTAGG AAACACCAGA GTATCAACAG TAAATGTTAG
  R
  ATTTCACAAG GAAGGAAGCA TTAGAATTTA AAATATAAAA TTCAAGCATT AGACAAAGGA
  GAACAATAAA ATGATATAAA TCTGGAGGGA TTTTTCACAC AGCCTATCTT TTTAGGTGTG
  CCTTTCCCAT ATTTTATTAA ACTCGAGTTG TTGTTTTAAA AAACAGCAGC ATTATCAAAG
  ACACATCTGT ACAAACATTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321812325	CHEV_6_67483983	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs265898208					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:67510973 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17511	CpG island 17511	581 bp distal
Cpgi17512	CpG island 17512	661 bp proximal
Gm42889	predicted gene 42889	within coordinates
Gm67034	predicted gene, 67034	683 bp upstream
Rr368087	regulatory region 368087	616 bp downstream
Rr631664	regulatory region 631664	1922 bp distal
Rr631666	regulatory region 631666	694 bp distal
Rr631667	regulatory region 631667	193 bp distal
Rr631668	regulatory region 631668	802 bp proximal
Rr631669	regulatory region 631669	1245 bp proximal
Rr631670	regulatory region 631670	1796 bp proximal
Rr631671	regulatory region 631671	1797 bp proximal
Rr631672	regulatory region 631672	1969 bp proximal
Tacstd2	tumor-associated calcium signal transducer 2	73 bp downstream
Tssr1867	transcription start site region 1867	1448 bp upstream
Tssr1868	transcription start site region 1868	1412 bp upstream
Tssr1869	transcription start site region 1869	651 bp upstream
Tssr1870	transcription start site region 1870	520 bp downstream
Tssr1871	transcription start site region 1871	171 bp downstream
Tssr1872	transcription start site region 1872	783 bp downstream
Tssr61254	transcription start site region 61254	326 bp upstream
Tssr61255	transcription start site region 61255	741 bp downstream
Tssr61256	transcription start site region 61256	1205 bp downstream
Tssr61257	transcription start site region 61257	1696 bp downstream
Tssr61258	transcription start site region 61258	1794 bp downstream
Tssr61259	transcription start site region 61259	1839 bp downstream