rs265883557 SNP Detail

Summary

• ID
  rs265883557
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:151946345 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTCATAGG TGGTCAGTGG
  TCTGCATTCC TATGTCAGAA GCGGTCAACC ATGTGATGAG ATAGGGCTGC CCAGGACAGA
  TGGCCTATTC TGAGATAAGG AATTTTCCCA TTTTTGTGGT TATTTCAGTC TGTTCTTTGG
  GAGGTGGTTT TATGATCTTG TTCTGAATTT TATGGTATGT TCCTAGAGCT GGTGTCTTAT
  R
  CCTTGGTTTC TGGGACTTAT GGTCTATTCC TGAAGTTGGT TCCTTATAGC CTTTAAAAAA
  AAAAAAAAAG CAAGCCGGGG GGGGGGGGGG GGGCGTGGTG GCGCAAGCCT TTAATCCCAG
  CAGAGGAGGC AGAGGCAGGT GGATTTCTGA GTTCGAGGCC AGCCTGGTCT ACAAAGTGAG
  TTCCAGGACA GCCAGGGCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356144609	MGP_WTSI_2_151930161	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs265883557					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356144609	MGP_WTSI_2_151930161	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:151946345 () rs orientation: forward

Symbol	Name	Function Class
9230118N01Rik	RIKEN cDNA 9230118N01 gene	252 bp downstream
Cpgi12438	CpG island 12438	583 bp proximal
Gm31475	predicted gene, 31475	1261 bp upstream
Rr567286	regulatory region 567286	1432 bp distal
Rr567287	regulatory region 567287	258 bp proximal
Rr567288	regulatory region 567288	1021 bp proximal
Rr567289	regulatory region 567289	1083 bp proximal
Rr567290	regulatory region 567290	1235 bp proximal
Rr567291	regulatory region 567291	1677 bp proximal
Srxn1	sulfiredoxin 1 homolog (S. cerevisiae)	1091 bp upstream
Tssr20767	transcription start site region 20767	377 bp upstream
Tssr20768	transcription start site region 20768	489 bp upstream
Tssr20769	transcription start site region 20769	1297 bp upstream
Tssr20770	transcription start site region 20770	1831 bp upstream
Tssr26780	transcription start site region 26780	942 bp downstream
Tssr26781	transcription start site region 26781	1615 bp downstream