rs265865820 SNP Detail

Summary

• ID
  rs265865820
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:179878685 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTTAGCCT TGGGGCTTGT
  TTTGACAGCC ACCAACACAC CCAGATGGCA GTTCCTCTTT GATAGACTGA AGCCCTGGAG
  AGGTGGGTGC GGTTCCTCTG CAGTCCACCC AGGCTCCCTA GCTGGGAACC TCTTCTCATC
  TGGAAGGTGA AGTTCCCCGG ATTCTGAATC CCCCCCCCCC CCCCCCCCCC CGTTAACACT
  K
  CTGTAGGCTA AGCAGTGCCT GGGCCCTCAG TTTCCTAGCT TCTGACTCTG AAGGAATGAC
  TTCCACTTAG CCTCATTTTA TTTTCCTGAT CTGTACAATG GGATCTGCCT GATACTTTCT
  CTGGTGTGCT AGGAAAGAAT ATTCTCAGGG TGATACAGTG TCACATGGAG AGAAAGTAAG
  GTGCCTTTTG AGATAAGGGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss356756069	MGP_WTSI_2_179971597	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs265865820					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356756069	MGP_WTSI_2_179971597	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:179878685 () rs orientation: forward

Symbol	Name	Function Class
Gm75705	predicted gene, 75705	17 bp upstream
Rr374375	regulatory region 374375	within coordinates
Rr572682	regulatory region 572682	1218 bp distal
Rr572683	regulatory region 572683	143 bp distal
Rr572684	regulatory region 572684	within coordinates
Rr572685	regulatory region 572685	1180 bp proximal
Rr572686	regulatory region 572686	1714 bp proximal
Rr572687	regulatory region 572687	1751 bp proximal
Tssr22215	transcription start site region 22215	1742 bp downstream
Tssr28084	transcription start site region 28084	1894 bp upstream
Tssr28085	transcription start site region 28085	272 bp upstream