rs265827649 SNP Detail

Summary

• ID
  rs265827649
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:108868869 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGCTTGTT GCTAGGCAAC
  ACTACTGACC CTTCCTGGGC TCACATAAGG CAGCGAGGGA AGTTGAGACA TAGTCTGTGT
  TCTGAGGGGC TGCATGCATA CTTGGTCATC TCCTAAGGAA CCAGAACAAA CCGCCTGAGC
  CGCCTGGCAG AGTCTGGCTT CCCTGAGATG TGTTCCGGGG CTGCAGAGCC ATTCCCTGGG
  Y
  AAGCGCTCTG TGAACCCTTA TTCTTAAACT GAATCTTCAA GGGTTCATAA TCAGTGGATT
  ATGAAATCAG AGGGTTTTCA GAGAGAAAAA TCCTCATTAC ATAAGCAGTG TCAAGCAGCT
  GCCCTCTTAA GTCTCTTAGC TGAATCCGCC AGATCTTTGT GTGCTCGAAA GGTGCGTTCC
  CCTCCCCCTC CCCAAGCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320867106	CHEV_3_108764471	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs265827649					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108868869 () rs orientation: forward

Symbol	Name	Function Class
Gm65815	predicted gene, 65815	910 bp upstream
Henmt1	HEN1 methyltransferase homolog 1 (Arabidopsis)	Noncoding-Transcript-Variant
Rr583357	regulatory region 583357	within coordinates