rs265761633 SNP Detail

Summary

• ID
  rs265761633
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:29695903 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTGCTGGA AAGGTTTCAC
  AGGGGCCCTG GTGTGAAGCA CAGGCACAGG GTACATAAGT GCCAGCCTAT TGGGACAAAT
  GAGAGACATC CCAGAGGGTG GTGATGACGC TCACTCTCAG CCATTGTACT CTTGGGAAGA
  TTGAAGTTTT GGGCTTCTGT CACAGTCTCG GTTTTGGAAC TAGAAAATCC AGCAGTTGCT
  R
  AACTTCCACG GTTTTATACA GGAGAAAGTT AAATCGCAAC AACAGTCAGG ATTTTCACCC
  GTGGCACCAG CTGGTTAGCA GGCTTGGGCT GGTGATTTTC AATTGAGCCA GCATGTGTGT
  AGGGAAAGCC CGGGACTTGG ATGGCTGCTA CTGTGGCTGG GGTAACCAGT CAACCCAAGT
  TCTCTTGGCC TTACTTCTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367818946	MGP_WTSI_6_29645904	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	A	G	A	G	G	A	G	G	G	G	A	G	G	G	G	A	A	G	G	A	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs265761633					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	A	G	A	G	G	A	G	G	G	G	A	G	G	G	G	A	A	G	G	A	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367818946	MGP_WTSI_6_29645904	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:29695903 () rs orientation: forward

Symbol	Name	Function Class
Rr627610	regulatory region 627610	1660 bp distal
Rr627611	regulatory region 627611	1127 bp distal
Rr627612	regulatory region 627612	1197 bp distal
Rr627613	regulatory region 627613	1149 bp distal
Tspan33	tetraspanin 33	Intron
Tssr1798	transcription start site region 1798	1650 bp downstream
Tssr55283	transcription start site region 55283	1710 bp downstream
Tssr55284	transcription start site region 55284	1654 bp downstream
Tssr55285	transcription start site region 55285	1633 bp downstream