rs265752478 SNP Detail

Summary

• ID
  rs265752478
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52787395 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCTCTGCT CTGACTGTAG
  ATGGCAAGGG GCCAGAGTGG AGAGTCGTGA AGACTTCTGC TTAGCTGTAT GATGTAGAAA
  TGGTCCGAGC CTTGCTTTCT CTAATTACAA AGCAGGGTGA ACTTTAAATC TGGCAGGGAC
  AAGCCAACAG CTCTGTGTCT CAGCAGCAGG TGCTGTCTGT CTGCTCCCCT CCACTGAGCA
  W
  ACTGAGCATG CGCTAGGCTA TTTTGACAAG TCACTCATTT CTCCCTGAAT TATAGCTGAC
  TCTGGAAACA TGCTCAGTCG TGGATATGAA CAGAAAAGAA CAGACTCCTT CGGGTAATTT
  TTAAAAACAT TTCAATAAGC CCCCCTCATC AAATGGGTTT TTAGAAAGTC GTGTCTCTTG
  AGTCTGCCTC TTCCAAGAGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	RF/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ
ss357967055	MGP_WTSI_3_52683896	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	RF/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ
rs265752478					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357967055	MGP_WTSI_3_52683896	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52787395 () rs orientation: forward

Symbol	Name	Function Class
Rr576595	regulatory region 576595	1156 bp distal
Rr576596	regulatory region 576596	within coordinates