rs265709831 SNP Detail

Summary

• ID
  rs265709831
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:5530756 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGCTAAAAG CCACCATGAC ATAGAATCGG
  GCCGTGAATG CCCAGATCAA AGCACACGTG CGTGGTGAGC TCAGCTGTTG TGACGCAGAC
  TCCTGCGCTG TATTCATCCG CATGCTGTGC TTCCTGCAAA TGGCTCAGTC AAGACTAAAC
  W
  CTGTAGGGAT GCTAATAGGA GTgggagatt ttggcttaca gactacccat aaatctctct
  gaaactttct tggaactgtg aggtgttctg aacccctgcc aaccaacact tctgtcttct
  ctgcttcaca ggtgttagtg ctgtacgagg                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321451367	CHEV_5_5480756	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs265709831					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:5530756 () rs orientation: forward

Symbol	Name	Function Class
Gm30325	predicted gene, 30325	within coordinates
Pttg1ip2	PTTG1IP family member 2	1613 bp upstream
Rr607007	regulatory region 607007	989 bp proximal
Rr607008	regulatory region 607008	1004 bp proximal
Rr607009	regulatory region 607009	1061 bp proximal
Tssr45089	transcription start site region 45089	1567 bp downstream
Tssr45090	transcription start site region 45090	795 bp upstream
Tssr50049	transcription start site region 50049	1696 bp upstream
Tssr50050	transcription start site region 50050	1681 bp upstream
Tssr50051	transcription start site region 50051	1649 bp upstream
Tssr50052	transcription start site region 50052	1620 bp upstream