rs265694490 SNP Detail

Summary

• ID
  rs265694490
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113053127 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACTCCCGCC CATCTTCTAG AAAGACTGGA
  GTTGCAGATC ACGAGGGAAG AGGGGGAAGG GATTCTCCCA GGCCCAGGGC GGTCCTCAGA
  AGCCAGGAGG CAGCAGAGAA CTCCCAGAAA GGTATTGCAA CACTCCCCTC CCCCCTCCGG
  R
  GAAGGGTGCG GCCTTCTCCC CGCCTACTCC ACTGCAGCTC CCTTACTGAT AACAACTCAG
  AGCGACTTTG GGAGAGCAAG TGCTTCCTGC CTCCAAAACA GCCCAACTGA GCCCTCGCTC
  CTTCCCTCCA CTCCCCGGAG TGCGCGATGG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321909780	CHEV_6_113026160	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs265694490					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113053127 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17829	CpG island 17829	within coordinates
Gt(ROSA)26Sor	gene trap ROSA 26, Philippe Soriano	within coordinates
Rr379953	regulatory region 379953	within coordinates
Rr407325	regulatory region 407325	within coordinates
Rr636448	regulatory region 636448	1524 bp distal
Rr636449	regulatory region 636449	within coordinates
Rr636450	regulatory region 636450	222 bp proximal
Rr636451	regulatory region 636451	1136 bp proximal
Rr636452	regulatory region 636452	1148 bp proximal
Rr636453	regulatory region 636453	1484 bp proximal
Setd5	SET domain containing 5	1199 bp upstream
Tssr58166	transcription start site region 58166	1188 bp upstream
Tssr58167	transcription start site region 58167	1221 bp upstream
Tssr58168	transcription start site region 58168	1289 bp upstream
Tssr58169	transcription start site region 58169	1401 bp upstream
Tssr58170	transcription start site region 58170	1465 bp upstream
Tssr62428	transcription start site region 62428	151 bp downstream
Tssr62429	transcription start site region 62429	1015 bp downstream
Tssr62430	transcription start site region 62430	1071 bp downstream