rs265688892 SNP Detail

Summary

• ID
  rs265688892
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132737784 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCCAAAGG AATGTCAGAC
  ACAGTCATGA GTTGGGATCA GCTCAGAAGC AGTCAATAGA CAAGTAGCAG GGCAGTGATC
  ACTGCATCAC TCATCTGTTT CTTCTGCAAA CCTTATCTAC CTTAGTGCCA AGGGAGGACA
  CATAGACACA GGGAAGAAAG ATCAACAGTA AAGGATGGCG GGGACGCGGG GGGGGGGGGG
  K
  GGAGTAGAGG GAATCACCAC TCTGTTACCG CCCAAGGGTT AAGGAAGGAA GGAAGCTTTG
  AAATTATCCA GATGCTGAAT CTACCACTTT CTAATCGGGA CACCTGGGCT CCGGAACTCT
  TATATCTAAA ATAGAAATAA GGTCTCGTAG GGTTTTTTCT GCAAGGCTCC AAGGACCCCG
  TGCTGCCCGG GTGCTCAGTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/1J	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
ss363306871	MGP_WTSI_4_132566388	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	G	G	G	T	G	G	T	T	T	T	T	G	T	T	T	T	T	T	T	T	G	G	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/1J	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
rs265688892					SNP	T	T	T	T	T	T	T	T	T	T	T	G	G	G	T	G	G	T	T	T	T	T	G	T	T	T	T	T	T	T	T	G	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363306871	MGP_WTSI_4_132566388	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132737784 () rs orientation: forward

Symbol	Name	Function Class
Ahdc1	AT hook, DNA binding motif, containing 1	1013 bp upstream
Cpgi14982	CpG island 14982	306 bp proximal
Rr601151	regulatory region 601151	1890 bp distal
Rr601152	regulatory region 601152	458 bp distal
Rr601153	regulatory region 601153	1136 bp distal
Rr601154	regulatory region 601154	543 bp proximal
Rr601155	regulatory region 601155	1196 bp proximal
Rr601156	regulatory region 601156	1241 bp proximal
Rr601157	regulatory region 601157	1742 bp proximal
Tssr39436	transcription start site region 39436	1010 bp upstream
Tssr39437	transcription start site region 39437	1045 bp upstream
Tssr39438	transcription start site region 39438	1321 bp upstream