rs265542949 SNP Detail

Summary

• ID
  rs265542949
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129998357 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGAGGCTT TTTTAAATAA
  ATAAATATAA ATATATATAT ATATATATAT ATTTTTTCAG GAATGGGTTT TTTTTGTACA
  GCCTTGGCTG TCCTAAAAGT AGCTCTTTAG ACCAGGCTGG CCTCCAACTC ACAGAGATCT
  GCCTGCCTCT GCCTCCCAAG TGCTGGGATT AAAGGTGTGC ACTACCACTG CCTGGCTGGC
  R
  TCAGGCTCTT ACAATGTCCT GTTCTAGACC ATGAGAGTGG CACCTAGAAA CCTCTAATCA
  TTGTTTAAGC TTGAAGAGAC CAGCTAACTC CATCTTGTCT TCCTGACTTG TTCTGAGTCA
  TGCTCTCTGG CAGTTACTGT GGATTCCAGG AATTACAGGT CTGACTGATA AACATCGTGG
  GTTTGTAGTC AAAACTATGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321317092	CHEV_4_129781808	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs265542949					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129998357 () rs orientation: forward

Symbol	Name	Function Class
Gm40258	predicted gene, 40258	891 bp downstream
Rr600439	regulatory region 600439	1996 bp distal
Rr600440	regulatory region 600440	1497 bp distal
Rr600441	regulatory region 600441	723 bp distal
Rr600442	regulatory region 600442	within coordinates
Tssr39229	transcription start site region 39229	322 bp upstream