rs265470582 SNP Detail

Summary

• ID
  rs265470582
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:60408546 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAAAGATA CCCACCAACA
  CCCGTGCAAG CTTCTTTCCC GCCCTTCGCC TTCCAGGTTC CAGGCGATGC GCTGCTTCTG
  CTGCTGCAGG CCGGGCAGCT AACTCTAACC TTCCGTCTAA CCTTGCGGGC CTCGCGGGCT
  GGGCGCGGAG CCCCGGGAGC TGGAGCGGCG GTGAGCGGCG CGGGCCCGGG CGAGCGAGCG
  R
  GCGGGCGGGC GGGGGCCGGG GCTGCGCGTG GGAGCTCTGC GCGTCCGCGC GCCTTCCTGG
  CGGGGCTGGC GCGGGGGAGG GGCCGCGCAG CGGCGGAAAC CGGCGCGCGG CGATAAGAGG
  CTGCACGGCG ACATGCCACA GTCTCTCGCC GCAGCCCGTC GAGTCGGGGC GCTCGCCATG
  CTCCCGTGAC CCGGACCCGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358137414	MGP_WTSI_3_60305047	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs265470582					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358137414	MGP_WTSI_3_60305047	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60408546 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13210	CpG island 13210			within coordinates
Mbnl1	muscleblind like splicing regulator 1			Intron
				Noncoding-Transcript-Variant
Rr577409	regulatory region 577409			1437 bp distal
Rr577410	regulatory region 577410			within coordinates
Tssr887	transcription start site region 887			736 bp upstream
Tssr29278	transcription start site region 29278			420 bp downstream
Tssr29279	transcription start site region 29279			330 bp downstream
Tssr29280	transcription start site region 29280			89 bp upstream
Tssr29281	transcription start site region 29281			132 bp upstream
Tssr29282	transcription start site region 29282			252 bp upstream
Tssr29283	transcription start site region 29283			759 bp upstream
Tssr29284	transcription start site region 29284			852 bp upstream
Tssr29285	transcription start site region 29285			1145 bp upstream
Tssr33421	transcription start site region 33421			603 bp downstream
Tssr33422	transcription start site region 33422			700 bp downstream