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rs265451914 SNP Detail
Summary
  • ID
    rs265451914
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr2:79959506 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AAAGCCGAAG GAAGGCTCTG
    CCAGAACTGC CGTCTTTGAC AGGCATATAC TCTGCTCACA TCACCAACGC CCCCACCACC
    ACCAACCCAA GCAGACAGAG TATAAACAGA TGCTCTGACC TCACGGGAGC AATCCACACA
    TGTGAGCTGC TACTGTACTA CTGACCGACT GCTCAGGCTA TTTGCCAAGC AGCTCATCTG
    Y
    AACTGTTCCG TGCACAGAAG CACATCAGAA TTTCTACAGT TTACGAGCTC AATTATGCAC
    GAAAGAAACG TGAATGACTT TCGCGCTCTA CAAGAAGCTG AATTCCTCTC TAGCAGCTGA
    AGCAGGGCAG GATGTAATAA GAAACCAGAT GGTAGGAAGC AGTACCAGCA GCACCACCCT
    GGGAAGAAAG TGCCTGTTTA                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss354604730 MGP_WTSI_2_79969319 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs265451914 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss354604730 MGP_WTSI_2_79969319 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:79959506 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi11847 CpG island 11847 within coordinates
Pde1a phosphodiesterase 1A, calmodulin-dependent Intron
mRNA-UTR
Noncoding-Transcript-Variant
Rr373421 regulatory region 373421 1957 bp downstream
Rr560061 regulatory region 560061 within coordinates
Rr560062 regulatory region 560062 286 bp proximal
Tssr24917 transcription start site region 24917 166 bp upstream
Tssr24918 transcription start site region 24918 139 bp upstream
Tssr24919 transcription start site region 24919 24 bp upstream
Tssr24920 transcription start site region 24920 within coordinates
Tssr24921 transcription start site region 24921 21 bp downstream
Tssr24922 transcription start site region 24922 55 bp downstream
Tssr24923 transcription start site region 24923 82 bp downstream
Tssr24924 transcription start site region 24924 128 bp downstream
Tssr24925 transcription start site region 24925 373 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory