rs265451914 SNP Detail

Summary

• ID
  rs265451914
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:79959506 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGCCGAAG GAAGGCTCTG
  CCAGAACTGC CGTCTTTGAC AGGCATATAC TCTGCTCACA TCACCAACGC CCCCACCACC
  ACCAACCCAA GCAGACAGAG TATAAACAGA TGCTCTGACC TCACGGGAGC AATCCACACA
  TGTGAGCTGC TACTGTACTA CTGACCGACT GCTCAGGCTA TTTGCCAAGC AGCTCATCTG
  Y
  AACTGTTCCG TGCACAGAAG CACATCAGAA TTTCTACAGT TTACGAGCTC AATTATGCAC
  GAAAGAAACG TGAATGACTT TCGCGCTCTA CAAGAAGCTG AATTCCTCTC TAGCAGCTGA
  AGCAGGGCAG GATGTAATAA GAAACCAGAT GGTAGGAAGC AGTACCAGCA GCACCACCCT
  GGGAAGAAAG TGCCTGTTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354604730	MGP_WTSI_2_79969319	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs265451914					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354604730	MGP_WTSI_2_79969319	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:79959506 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11847	CpG island 11847			within coordinates
Pde1a	phosphodiesterase 1A, calmodulin-dependent			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr373421	regulatory region 373421			1957 bp downstream
Rr560061	regulatory region 560061			within coordinates
Rr560062	regulatory region 560062			286 bp proximal
Tssr24917	transcription start site region 24917			166 bp upstream
Tssr24918	transcription start site region 24918			139 bp upstream
Tssr24919	transcription start site region 24919			24 bp upstream
Tssr24920	transcription start site region 24920			within coordinates
Tssr24921	transcription start site region 24921			21 bp downstream
Tssr24922	transcription start site region 24922			55 bp downstream
Tssr24923	transcription start site region 24923			82 bp downstream
Tssr24924	transcription start site region 24924			128 bp downstream
Tssr24925	transcription start site region 24925			373 bp downstream