rs265424556 SNP Detail

Summary

• ID
  rs265424556
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:67514079 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    agaggaagt cgagacacga gggacaaatg
  cttacccaaT AGCAGTAGGA GATCTCGGTA CACACCTCTG ATTTCTACCC CCACTGTCTC
  TTGAACAACT AGCTTATCCT GTCCAGCTTC CACCCACCTT GCCTCAGAGA AAGATCTAAA
  R
  CACAAATGTG TGCACATCTT CTTTTTTGTT GAGAATActc tctctctctc tctctctctc
  tctctctctc tctctctctc tctctctctG TGTGTGTGTG TGTATGTACA GGTAAGGAGA
  CATCTTGGCT CTAAGAACAG AGTTCATATT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321812348	CHEV_6_67487089	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs265424556					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:67514079 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17512	CpG island 17512	1219 bp distal
Gm42889	predicted gene 42889	within coordinates
Rr631669	regulatory region 631669	1840 bp distal
Rr631670	regulatory region 631670	1289 bp distal
Rr631671	regulatory region 631671	1019 bp distal
Rr631672	regulatory region 631672	1116 bp distal
Tacstd2	tumor-associated calcium signal transducer 2	1299 bp upstream
Tssr61256	transcription start site region 61256	1869 bp upstream
Tssr61257	transcription start site region 61257	1398 bp upstream
Tssr61258	transcription start site region 61258	1293 bp upstream
Tssr61259	transcription start site region 61259	1225 bp upstream