rs265399013 SNP Detail

Summary

• ID
  rs265399013
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:114946702 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGGC TAGAAACAGA GACTGGGACC
  G
  GTCCCAGTGC ACCTTCAAAT GCTTG                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321275326	CHEV_4_114762110	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs265399013					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:114946702 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pdzk1ip1	PDZK1 interacting protein 1			Intron
				Noncoding-Transcript-Variant
Rr597714	regulatory region 597714			772 bp distal
Tssr1267	transcription start site region 1267			1491 bp upstream
Tssr38446	transcription start site region 38446			736 bp downstream
Tssr38447	transcription start site region 38447			715 bp downstream
Tssr38448	transcription start site region 38448			633 bp downstream
Tssr38449	transcription start site region 38449			596 bp downstream
Tssr38450	transcription start site region 38450			580 bp downstream
Tssr38451	transcription start site region 38451			356 bp downstream
Tssr38452	transcription start site region 38452			346 bp downstream
Tssr38453	transcription start site region 38453			655 bp upstream
Tssr38454	transcription start site region 38454			663 bp upstream
Tssr38455	transcription start site region 38455			683 bp upstream