rs265378456 SNP Detail

Summary

• ID
  rs265378456
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:76157575 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TAATGTTCC TAGCCTGGAT CCCCAGCCGA
  GATCACTTTA TAACATAAAC GGCAAAGTAC CATTTTCACA GCAGGGACAA CTGTGTTCAT
  CTTCAAAAAG AGGCATTAAT AAAATGAGCC TGTAATGAAC ATGCTAATTC TGCTCGCAGG
  M
  TAGAGCACAG AGGCACAGGC TTCGCTGCCA CCTCCCTGAA TGATGGTAAA AGTTGTTCAC
  GTTCCTTTTT CCTTAACAAC AGCTATAATG GCTTATTTTT TTTTTGAACA GACATATTAT
  GCAAACATCG CTCTGTGTTT TACAATGCAA                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321170231	CHEV_4_75885242	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs265378456					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:76157575 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ptprd	protein tyrosine phosphatase receptor type D			Intron
				Noncoding-Transcript-Variant
Rr594076	regulatory region 594076			within coordinates
Rr594077	regulatory region 594077			1871 bp proximal