rs265288084 SNP Detail

Summary

• ID
  rs265288084
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:121518934 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTACCAAATG GTAGAGTTGT CATGGTAATC TGCTGGCTAC
  TGTGATGTTC CATCAAATGG AAACATTCCA TATGCTAAAC TGATATGACA GGAACTGGCG
  C
  GGGGGGGGGG GGGGTTGTAC CTCTGTCCCT TGAGTGCTTA CCAAGCACAC CTAAGTCCTG
  GTTTAGATAC TCAACCCAGC ATAGAATTGT CACTGTGGT                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CBA/J	KK/HlJ	LP/J	MA/MyJ	WSB/EiJ	ZALENDE/EiJ
ss359482718	MGP_WTSI_3_121428203	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CBA/J	KK/HlJ	LP/J	MA/MyJ	WSB/EiJ	ZALENDE/EiJ
rs265288084					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359482718	MGP_WTSI_3_121428203	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121518934 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13760	CpG island 13760			969 bp distal
F3	coagulation factor III, tissue factor			Intron
				Noncoding-Transcript-Variant
Gm43823	predicted gene 43823			1847 bp upstream
Gm64338	predicted gene, 64338			within coordinates
Rr584149	regulatory region 584149			1782 bp distal
Rr584151	regulatory region 584151			1738 bp distal
Rr584152	regulatory region 584152			1566 bp distal
Rr584153	regulatory region 584153			1065 bp distal
Rr584154	regulatory region 584154			1532 bp distal
Tssr31453	transcription start site region 31453			1751 bp downstream
Tssr31454	transcription start site region 31454			1724 bp downstream
Tssr31455	transcription start site region 31455			1700 bp downstream
Tssr31456	transcription start site region 31456			1667 bp downstream
Tssr31457	transcription start site region 31457			459 bp downstream
Tssr35426	transcription start site region 35426			1876 bp upstream