rs265273682 SNP Detail

Summary

• ID
  rs265273682
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:63946041 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCATTGGG ACTGCACATA
  ATGACTCTCA TTTGAGAGAG AATATCTCTC CCCCACAAAT TAATAGGCAG ACCCGGGACA
  ACATAAGGCT GAATAGAGCC AGAGTTTCCC TCACCATCTT CCCAAATCAA CAGCTGTGAA
  CTCTGGAGAG TATTTTTTGA TTGTCCAATC CCCTGTAAGT GAGTTAAAGA GGCCTTTAAC
  K
  GCCAGGCAGC GGGCCAGGCA CTTGGTGAGA TTACAGTGGA ATCAGCACCT GAGTCTAAGA
  GGCCCTCAAA GCTCTTGCCA TTTATCTTAA GGCAGAGTGC AGTCTTTGGT AATTGCTTGG
  ACCCAGGAAA GGTCTGATGA CCTTGGCTGT GAGGAGCCAC GACGAGTGCT CATTGCTGGA
  TAGGAAGTGT CTAAAGGTAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	FVB/NJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358213186	MGP_WTSI_3_63842542	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	FVB/NJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs265273682					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358213186	MGP_WTSI_3_63842542	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:63946041 () rs orientation: forward

Symbol	Name	Function Class
Rr577614	regulatory region 577614	1003 bp proximal
Rr577615	regulatory region 577615	1279 bp proximal
Tssr29383	transcription start site region 29383	679 bp upstream