rs265221552 SNP Detail

Summary

• ID
  rs265221552
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:7845444 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGCCCGCCA GCTGTGTGCA
  CTCAGGTGCG GGCACCTTCC GGCCGCAACA GTCCCGAGTG CCCGCCGCCG TTGGACCGTC
  AGCTTTGTCT GGAGCTGGTC GGTTATGGTT GGAACTTTCC CTGCCCTTCG TTGACTGAGT
  GAACCAGCCA GGTGTGTTGG GGGCTTGCTA CGCGCAGGAT TTAAAAAAAA AATGTTTTTT
  K
  TTTTTTCTTT TTCCTTTGGT AACAAAGTGT GATGGCTTTC CTAGATGTTG GCTAGTTAAA
  CAAAGTGCTT TGACTTTAGA TAGATACTCT TCTAAATTAA CTAATTTAAG AGTGAGGATC
  GGGGATTAAT GCTTTTGAGC TCTGTCCACA CTTCTTACTA GTGGCGTGGG ACTTAGAATA
  TTCTAAGATC CCTTACTTCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367306447	MGP_WTSI_6_7795444	EVA_MGPV3	EVA_MGPV3	f	SNP	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs265221552					SNP	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367306447	MGP_WTSI_6_7795444	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:7845444 () rs orientation: forward

Symbol	Name	Function Class
C1galt1	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	Intron
Cpgi17149	CpG island 17149	21 bp distal
Rr399558	regulatory region 399558	719 bp downstream
Rr399559	regulatory region 399559	1342 bp upstream
Rr626324	regulatory region 626324	592 bp distal
Rr626325	regulatory region 626325	867 bp distal
Rr626326	regulatory region 626326	within coordinates
Rr626327	regulatory region 626327	1357 bp proximal
Tssr54889	transcription start site region 54889	767 bp downstream
Tssr54890	transcription start site region 54890	641 bp downstream
Tssr54891	transcription start site region 54891	585 bp downstream
Tssr54892	transcription start site region 54892	145 bp downstream
Tssr54893	transcription start site region 54893	115 bp downstream
Tssr54894	transcription start site region 54894	1533 bp upstream