rs265202366 SNP Detail

Summary

• ID
  rs265202366
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:145124621 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTCCTCC TCCTCCTCCT
  CCTCCTCCTC CTCCTCCTCC TCCTCCTCCC ACTCCCCCTC CTATTCTACC TATAGGTTCA
  CCAAAAAAGT CAAGAGTCCA ATCCACACTT TTCCACTGGA CACTGGCATA CTTTCTCCAT
  GGTGAACTAT ATCTTTAACT AAGAGCCAAA ATAAATCTTC TACCACTTTA GTTGCTTTCT
  S
  TCATGTACTT GGTCATATGA ATGAGGGAAA CATTACTCAG GTCCCAAGTT AATTTTTCCA
  TGCCACATTT TATTTATGCT ATGTAGGTAA AGTACCTATG AAGTCAGGCC CTGTGCCCAC
  TCCCAGGATG CTACCATGTA TACTCACTAG ACCTTTTATT CTTTAGAGAT GGTCTTTTCT
  GTCTATATCA AGCACACCAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321008305	CHEV_3_145081830	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs265202366					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145124621 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9530034A14Rik	RIKEN cDNA 9530034A14 gene			822 bp upstream
Col24a1	collagen, type XXIV, alpha 1			Intron
				Noncoding-Transcript-Variant
D530037P16Rik	RIKEN cDNA D530037P16 gene			460 bp upstream
Rr586779	regulatory region 586779			833 bp distal
Rr586780	regulatory region 586780			634 bp distal