rs265098698 SNP Detail

Summary

• ID
  rs265098698
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110253254 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTTTGTGA TAAAGAGACC
  CTAATGTGAT TACATTGGTG TCGGCTCCTT GGTTGTCTTT TGGGGTTCAT GAACACTTCC
  TGGCACAACA CTGGATAGCC CAGGCTGATG TTAGACTCAC ATCAATCCAA CTTCAGCCTC
  CCCAGTGTTC AGATTTGCAA ATATGGACCT CCGAGCCAGC TTTACTTCTT TTACTTACTC
  Y
  GTTAACTGTA ATCGAGGCAT CTTGATATGT AGCTGTCCTC CCCTTTTACC TCCTCCAACT
  CCCTCCTCCC CTACCCCCCC CCCAGCATCC TCAACACGTC CCCTCCCCCA CCTCATGTCT
  TCTCTGAGTC CTGTTAGCGC CACCGGTTGC AAAGCTGACT GATCTTGTGG ACTTGTCCAG
  GGAACCACAT CTGCAAGTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378902822	MGP_WTSI_9_110326690	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs265098698					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378902822	MGP_WTSI_9_110326690	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110253254 () rs orientation: forward

Symbol	Name	Function Class
Klhl18	kelch-like 18	1740 bp downstream
Ngp	neutrophilic granule protein	1174 bp downstream
Tssr3023	transcription start site region 3023	1804 bp upstream
Tssr3024	transcription start site region 3024	1786 bp upstream
Tssr3025	transcription start site region 3025	1697 bp upstream
Tssr3026	transcription start site region 3026	1648 bp upstream
Tssr3027	transcription start site region 3027	1551 bp upstream
Tssr3028	transcription start site region 3028	1485 bp upstream
Tssr3029	transcription start site region 3029	1469 bp upstream
Tssr3030	transcription start site region 3030	1458 bp upstream
Tssr3031	transcription start site region 3031	1266 bp upstream
Tssr87368	transcription start site region 87368	1908 bp downstream
Tssr87369	transcription start site region 87369	1890 bp downstream
Tssr87370	transcription start site region 87370	1840 bp downstream
Tssr87371	transcription start site region 87371	1812 bp downstream
Tssr87372	transcription start site region 87372	1742 bp downstream
Tssr87373	transcription start site region 87373	1702 bp downstream
Tssr87374	transcription start site region 87374	1680 bp downstream
Tssr87375	transcription start site region 87375	1657 bp downstream
Tssr87376	transcription start site region 87376	1651 bp downstream
Tssr87377	transcription start site region 87377	1637 bp downstream
Tssr87378	transcription start site region 87378	1586 bp downstream
Tssr87379	transcription start site region 87379	1541 bp downstream
Tssr87380	transcription start site region 87380	1324 bp downstream
Tssr91619	transcription start site region 91619	1856 bp upstream
Tssr91620	transcription start site region 91620	1752 bp upstream
Tssr91621	transcription start site region 91621	1673 bp upstream
Tssr91622	transcription start site region 91622	1611 bp upstream
Tssr91623	transcription start site region 91623	1176 bp upstream