rs265071911 SNP Detail

Summary

• ID
  rs265071911
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:32094323 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTTGCTCC AGCCACACCT
  AATCTTCAGG GACGCTAGAC TATACAGGAG GTGGGACGCT AGACTGTACA GGAGGTGGGA
  CGCTAGACTG TACAGGAGGT GGGACGCTAG ACTGTACAGG AGGTGGGATG CTAGACTGTA
  CAGGAGGTGG GACGCTAGAC TGTACAGGAG GTGGGACGCT AGACTGTACA GGAGGTGGGA
  Y
  GCTAGACTGT ACAGGAGGTG GGCAGTTGAT TGGGGTTCAG AATGCAGTGG TGCAGCTTTG
  GGGGTCATCC CCACACGGAG GTGGGGATTT TAGATGGTTT GCCTTCAAGT CATCCATGCC
  TCTGTAAGTA ACCCACACCC ATGCTCCTGT AAGACCAATG AACTCATTGG TTCACCACGC
  TGGACTTGGT TGGAATCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395855773	MGP_WTSI_16_32275591	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs265071911					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395855773	MGP_WTSI_16_32275591	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32094323 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8187	CpG island 8187	1816 bp proximal
Gm60870	predicted gene, 60870	1590 bp upstream
Rnf168	ring finger protein 168	1954 bp upstream
Rr514672	regulatory region 514672	1874 bp distal
Rr514673	regulatory region 514673	170 bp distal
Rr514674	regulatory region 514674	438 bp proximal
Rr514675	regulatory region 514675	1481 bp proximal
Smco1	single-pass membrane protein with coiled-coil domains 1	724 bp downstream
Tssr137960	transcription start site region 137960	1944 bp upstream
Tssr137961	transcription start site region 137961	1974 bp upstream