rs265071106 SNP Detail

Summary

• ID
  rs265071106
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:113813931 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGGCAGCC CACAGTGAGT
  GATAGCAGCC CTGGCTGGGC AGAGCATTGC TGGATGGTCA TCAGGGCCTC CTTATCCTGC
  TGAAATCACC CAGGAGCTTT CTGGTCAGCT GCAGGGTGGC CCCTTTTTGA ACTGCTTTCT
  GCTTTCCTTT GTACCCCCTG GCTGGCCTGC AGAGCCGTGT ACCCAGTATA CTCCTCAGCA
  Y
  GCACTAATGG GTCCTGGCTT TATTCTGTTG ATGATTCATA TGCCGTGTGG GTGCTGCTCT
  GTAGGGCTGC CCCATTGACT CAGGCATCAG GATCAGCCCA CTTTTAAAGG ACTTTTCTCC
  ATGGTGGGGG TGAGAGTGTC TCAGGGAGGG TGTGTATGCA TTCCAAAGCA AAAAGCAGGC
  TTAAAAAAAA AAACCCAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321912047	CHEV_6_113786964	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs265071106					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113813931 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atp2b2	ATPase, Ca++ transporting, plasma membrane 2			Intron
				Noncoding-Transcript-Variant
Rr636604	regulatory region 636604			1541 bp proximal
Rr636605	regulatory region 636605			1716 bp proximal