rs264958228 SNP Detail

Summary

• ID
  rs264958228
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:62422256 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AATAGCCTG GGATGTCATA GGAAAGATGG
  TGGTGGTCTT TGATATTCTG AATCTAGCTT CTTTTTGATT TGCAGCTTCA AAGCTGGGTA
  CACTTagcca ggtgtggtgg taaacctgca agtccagtta ggaagccgag gcagaagtta
  Y
  agaccagcct tggctatgga gcatgatccc atttcaaaca gaaaaacaTA TGTACCCTTT
  AATGGATGTT TTCATCCCAT AACTCAGTTA TTAAAATCCC CTGACAGTTT CACCCCTTGG
  TCCATCGGAG CCCCCTGGCT TCTTACTCTG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321142494	CHEV_4_62165053	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs264958228					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:62422256 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14361	CpG island 14361	1509 bp distal
Hdhd3	haloacid dehalogenase-like hydrolase domain containing 3	1819 bp upstream
Rr593325	regulatory region 593325	1754 bp distal
Rr593326	regulatory region 593326	1253 bp distal
Rr593327	regulatory region 593327	1441 bp proximal
Tssr42008	transcription start site region 42008	1837 bp upstream
Tssr42009	transcription start site region 42009	1793 bp upstream
Tssr42010	transcription start site region 42010	1759 bp upstream