rs264858866 SNP Detail

Summary

• ID
  rs264858866
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:83752724 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCAGAGGTC CAGTAGGACC
  AGCTCGGGGT CGTCAGCGCC CAGCTGCAAA GAGCAGCAGC GGTTGGCGGC TCGGGGCATC
  GGGGCGCGCG CGGCCCGGGT CAGCGCTCTC ACCGACGGCC AGAGTGATGA ATGCCACCTG
  GATGAACAGC GACAGCCAGC TCAGCACGTA CATGAACCAC ATGGCGCCCC CCGGGCCGCC
  S
  GGACGGGCCT GCGCGGTCCG GCTCCCGCGA CACTGAGCGG CCGCCGCCGT GCTGTCCCCG
  CCCAGAGGAC GCCGAGAGGA GCAGGGCGGA GCGCCGCGGC CCCTGCGCCC CCGCCAAGCC
  CGCGAGCGCC GCTAACCGGC TCGGAGGATC GAAATCGCGC TGCACCCGGT ACGGAGCGCC
  TACACAGAGC CCAGATTGAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369039072	MGP_WTSI_6_83725736	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	C	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs264858866					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	C	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369039072	MGP_WTSI_6_83725736	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83752724 () rs orientation: forward

Symbol	Name	Function Class
Gm52907	predicted gene, 52907	143 bp upstream
Rr632937	regulatory region 632937	1296 bp distal
Rr632938	regulatory region 632938	52 bp distal
Rr632939	regulatory region 632939	61 bp proximal
Rr632940	regulatory region 632940	154 bp proximal
Rr632941	regulatory region 632941	459 bp proximal
Tex261	testis expressed gene 261	mRNA-UTR
Tssr1911	transcription start site region 1911	186 bp upstream
Tssr57375	transcription start site region 57375	91 bp downstream
Tssr61705	transcription start site region 61705	173 bp upstream
Tssr61706	transcription start site region 61706	162 bp upstream
Tssr61707	transcription start site region 61707	145 bp upstream
Tssr61708	transcription start site region 61708	127 bp upstream
Tssr61709	transcription start site region 61709	66 bp upstream
Tssr61710	transcription start site region 61710	4 bp downstream
Tssr61711	transcription start site region 61711	25 bp downstream