rs264846301 SNP Detail

Summary

• ID
  rs264846301
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:19802159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCGAGAGCA GCCGCACCTG
  TGGGTCGCAG TGCACTGGAG GGTGAGATAG GAGCTTGCTA CCCTGGATGT GGCTCAACCT
  TGATTGGAGT AGAAATATTT TCTACAATAG GTGGACGGTA GGTGCGTACG ACTGGAGCAC
  GGTGGCTGCC CTTGGGCTTG AGCGACCACC ACTATTTTGA CCTTTTAAAA ATATTAAAAA
  Y
  GTTGGGGATT CACGTGCCAC CTCGTGTGTA TGAAGATCAG AGAACTGGCT TTTTCTTCCA
  CCTTGTGTCC TAGAACTCAA GTCGTCGGGT TTGACGGCAA GGTGCCCTTA CCTGCTGAAC
  TGTCTCACCG CCCCTTGGTC TTATTGTAGG TGGGCACCAA CGGCATCATC TCCACCCAGG
  ACTTCCCCAG GGAGACTCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss390453467	MGP_WTSI_14_20571313	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs264846301					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss390453467	MGP_WTSI_14_20571313	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:19802159 () rs orientation: forward

Symbol	Name	Function Class
Gm62728	predicted gene, 62728	945 bp upstream
Nid2	nidogen 2	Intron
Rr389324	regulatory region 389324	42 bp downstream
Rr488149	regulatory region 488149	956 bp distal
Rr488150	regulatory region 488150	1956 bp distal
Rr488151	regulatory region 488151	816 bp distal
Tssr124369	transcription start site region 124369	1166 bp downstream
Tssr124370	transcription start site region 124370	1137 bp downstream
Tssr124371	transcription start site region 124371	1123 bp downstream
Tssr124372	transcription start site region 124372	799 bp downstream
Tssr127556	transcription start site region 127556	945 bp upstream