rs264763194 SNP Detail

Summary

• ID
  rs264763194
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:119495049 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACAGAGAC AGGGAGATGC
  AACTCTGCTA TTCCTTCGGT GGTAGGCGTC AAGGAGACAT GGTTAAGTAG CCTATGTCTT
  GGGCTTGCTT TTCCCCTGCT GTAACCTGTG TGAAAGGAGC CTGCCAACTC TAGGAAGGAA
  TATGGCTTAT TGAGGATGGG TGGCTGGACA TGTCTCAGGG CACAAGTTGT GACCCAGAAA
  Y
  TTTAAAAACC TAATATCATT GTATTTTAAT TTTTAGGATT GATTGCTTAG GGGAATCATA
  GAGTGTGTTC AAAAGCTTGA ACTCAGGTTA TAAGGATTGA TGGTAGAGTA CCTCCCCCTG
  CCGCAGCAGT CCTAATGGCT CTGAGTACAG AGGTACGCTT CGCTTATCCT CAAGGAGACC
  CATGTCTCAG AAGTTTCTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355434363	MGP_WTSI_2_119490304	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs264763194					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355434363	MGP_WTSI_2_119490304	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119495049 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12124	CpG island 12124	1615 bp distal
Gm75025	predicted gene, 75025	536 bp downstream
Gm75032	predicted gene, 75032	525 bp upstream
H3f3c	H3 histone, family 3C	1058 bp downstream
Ndufaf1	NADH:ubiquinone oxidoreductase complex assembly factor 1	1747 bp upstream
Rr397235	regulatory region 397235	1596 bp downstream
Rr563557	regulatory region 563557	1781 bp distal
Rr563558	regulatory region 563558	1257 bp distal
Rr563559	regulatory region 563559	1364 bp proximal
Tssr25825	transcription start site region 25825	1733 bp upstream
Tssr25826	transcription start site region 25826	1582 bp downstream