rs264745572 SNP Detail

Summary

• ID
  rs264745572
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95042665 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCAGTGGG AGGAGCAACT
  CCTGTAGATG GTGAGGGAGG TGGGTGAGTG GGGGCGGGGC TTACAGCCAT TAACTGGACT
  TGTGTCCCTA TCAACTTAAG ACTGATAAAC CAGTTTGATC AAGGTCGAAT CACTTAAGTG
  TCAGAGTAAG GTTTCTGTCT GACTCTAAAG CCGGTACTAT TAGCCATGCG GGGGTGGGGT
  R
  GGGGTGGGGG TGGGGATGTA GAGACTGGTA AGGAAGAGCT GACTTTTACT AGCACTCTGA
  AGGTGCCCAT TTGTAGTTCT TATTTCCACC CCAAGGCTCT GTTTTCTTTG TGCAGAGGCA
  CAAAACAAGT CCCCTCTACA TACTTCAAGT GTTTCAGGTC ATCTTTAGGA GAGGTTTGAT
  GGGCATAAAA AATATCTTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358895692	MGP_WTSI_3_94939276	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs264745572					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358895692	MGP_WTSI_3_94939276	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95042665 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13498	CpG island 13498	1299 bp distal
D3Umi10	DNA segment, Chr 3, University of Michigan 10	1115 bp distal
Lysmd1	LysM, putative peptidoglycan-binding, domain containing 1	Intron
Rr367480	regulatory region 367480	1265 bp downstream
Rr580823	regulatory region 580823	1256 bp distal
Rr580824	regulatory region 580824	within coordinates
Rr580825	regulatory region 580825	396 bp proximal
Rr580826	regulatory region 580826	995 bp proximal
Scnm1	sodium channel modifier 1	1380 bp upstream
Tssr34419	transcription start site region 34419	1441 bp upstream
Tssr34420	transcription start site region 34420	1366 bp upstream
Tssr34421	transcription start site region 34421	1337 bp upstream